The efficient degradation of organic dyes via photocatalysis presents a critical environmental challenge, necessitating advancements in catalyst design and performance. This study investigates the potential of pure and Eu doped CoMoO4 polymorphic nanostructures in addressing this challenge. Our primary focus is on enhancing the efficiency and stability of photocatalysts under diverse condition by performing sol–gel synthesis. Characterization techniques such as X-ray diffraction (XRD), scanning electron microscopy (SEM), ultraviolet–visible (UV-visible) analysis and Raman analysis was employed to elucidate structural and morphological changes. Our results highlight the significant enhancement in photocatalytic activity achieved through phase transitions induced by Eu doping. This enhancement is attributed to the creation defect sites and the establishment of improved charge transfer pathways within the CoMoO4 nanostructures. By shedding light on the role of phase transition in photocatalysis, this study contributes valuable insights for the design of efficient and durable photocatalysts for environmental remediation application.